DisGeNET - a database of gene-disease associations

List of associated variants

Chronic Periodontitis, C0266929

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs639752	WTAPP1 ; MMP3	0.882	0.120	11	102836608	non coding transcript exon variant	C/A	snv		0.54	3
rs1799750	WTAPP1 ; MMP1	0.592	0.760	11	102799765	intron variant	C/-	delins		0.50	48
rs2228570	VDR	0.521	0.760	12	47879112	start lost	A/C;G;T	snv	0.63		99
rs731236	VDR	0.542	0.760	12	47844974	synonymous variant	A/G	snv	0.33	0.34	81
rs7975232	VDR	0.576	0.760	12	47845054	intron variant	C/A	snv	0.51	0.55	56
rs1041163	VCAM1	0.882	0.160	1	100718269	upstream gene variant	T/C	snv		0.18	3
rs9533156	TNFSF11	0.807	0.280	13	42573535	intron variant	T/C	snv		0.47	8
rs2277438	TNFSF11	0.827	0.160	13	42581032	intron variant	G/A;C	snv			5
rs1800630	TNF ; LOC100287329 ; LTA	0.701	0.480	6	31574699	upstream gene variant	C/A	snv		0.14	17
rs361525	TNF	0.562	0.760	6	31575324	upstream gene variant	G/A	snv		4.6E-02	62
rs4986790	TLR4	0.438	0.800	9	117713024	missense variant	A/G;T	snv	6.1E-02; 4.0E-06		223
rs4986791	TLR4	0.456	0.840	9	117713324	missense variant	C/T	snv	5.7E-02	4.9E-02	182
rs1927911	TLR4	0.658	0.640	9	117707776	intron variant	A/G	snv		0.62	28
rs2149356	TLR4	0.742	0.360	9	117711921	intron variant	T/G	snv		0.54	14
rs7873784	TLR4	0.752	0.440	9	117716658	3 prime UTR variant	G/A;C;T	snv			11
rs1927907	TLR4	0.790	0.320	9	117710486	intron variant	C/T	snv		0.18	7
rs5743708	TLR2	0.525	0.800	4	153705165	missense variant	G/A	snv	1.7E-02	1.8E-02	98
rs1800470	TGFB1	0.515	0.840	19	41353016	missense variant	G/A;C	snv	0.55; 2.4E-04		107
rs1800472	TGFB1	0.752	0.360	19	41341955	missense variant	G/A	snv	2.6E-02	2.3E-02	11
rs5906435	SYN1	1.000	0.040	X	47589011	intron variant	C/G;T	snv			1
rs12976445	SPACA6 ; SPACA6P-AS ; MIRLET7E ; MIR125A	0.689	0.600	19	51693200	non coding transcript exon variant	T/C	snv		0.45	20
rs6354	SLC6A4	0.732	0.280	17	30222880	5 prime UTR variant	G/C;T	snv			16
rs12449783	SLC6A4	1.000	0.040	17	30200635	intron variant	A/C;T	snv			1
rs6596473	SLC23A1	0.807	0.120	5	139374887	intron variant	G/C;T	snv			7
rs3795391	S100A8	0.882	0.040	1	153390629	non coding transcript exon variant	T/C	snv		8.3E-02	3